Tetrahedron; Volume 61, Issue 42, 17 October 2005, Pages 9980-9989

"Computer-Aided Determination of Relative Stereochemistry and 3D models of Complex Organic Molecules from 2D NMR Spectra"

Yegor D. Smurnyy, Mikhail E. Elyashberg, Kirill A. Blinov, Brent A. Lefebvre, Gary E. Martin, and Antony J. Williams

Abstract

A method for elucidation of the relative stereoconfiguration of natural product molecular structures and their 3D models based on NOE data and the application of a genetic algorithm is described. The method is applicable mainly for rigid polycyclic structures commonly encountered in natural products. It is demonstrated that the technique of simulated annealing cannot be easily used when dealing with low-weight fused ring molecules but the application of a genetic algorithm is proven successful. Examples of a typical genetic algorithm workflow and the optimization of the algorithmic parameters are discussed. The efficiency of the approach developed here is demonstrated on the complex natural products of both Taxol^® (C47H51NO14) and brevetoxin B (C50H70O14).