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ACD/Labs Blog

A deuterated solvent can impact whether exchangeable protons, such as OH or NH, are visible on a 1H NMR spectrum. The advantage of eliminating any contribution from an exchangeable proton(s) is to simplify spectral interpretation. One disadvantage of not seeing exchangeable protons is the deficiency to the total proton count in establishing the molecular formula....

Yes, it is possible to elucidate an unknown with just a 1H NMR spectrum but only for specific cases*. Case 1: an unknown with a low molecular weight and a “well-resolved” 1H NMR spectrum. Case 2: the unknown has been identified previously, or at least part of it, in a database/library/literature and a spectrum search...

When dealing with a structure elucidation problem where little or no previous fragment information exists, the number of possibilities can seem endless. Although typically one envisions a neutral compound for the unknown, ionic compounds, such as salts and zwitterions, are also just as likely and thus can add to the complex nature of an elucidation....

Chemical shift information offers a clue into an atom’s hybridization state. For example, carbon atoms with a carbon chemical shift greater than 90 ppm are typically considered as sp2 carbons. If 4 sp2 carbons are present, one can infer 2 alkene pairs. Five sp2 carbons and an available oxygen and nitrogen atom suggest the possibility...

A common misinterpretation of 2D NMR data can occur when dealing with weak correlations. Weak correlations are commonly introduced in how the sample is prepared or how the data is collected or processed. Examining the spectrum down to level of the density matrix can ensure all correlations are picked up. The 1H-13C HMQC below shows...

Many organic chemists employ Mass spectrometry (MS) as a convenient verification tool for their product in a synthetic reaction. Derivatization such as adding a protective (or protecting) group can often be detected by MS. The EI mass spectrum for tert-butyl 3-aminopiperidine-1-carboxylate is shown below. The ‘terminal’ atoms belonging to the protective group, tert-Butyloxycarbonyl (BOC or...

Infrared (IR) spectrometry is an excellent diagnostic tool for identifying, or lack of, a carbonyl functional group(s). Carbonyl stretching vibration absorbs between 1900-1600 cm-1—a region where few other functional groups absorb. In addition, the carbonyl vibration is typically intense and thus easy to spot. The gas phase FT-IR spectra, shown below, represent five carbonyl bands...

Infrared (IR) spectrometry can serve as a simple method to gather information on the presence of OH. Characteristic OH absorptions occur around the ranges of 3700-3200 cm-1 (OH stretching) and 1200-1000 cm-1 (OH bending). In the case of hydrogen-bonded OH, the band in the region 3700-3200 cm-1 generally appears broad and sometimes can go unnoticed....

In electrospray ionization MS (ESI-MS), ions are produced by the addition of a proton ([M+H]+). However, in cases where the analyte molecule is already charged, e.g. quaternary amine salts, the resulting ion may be an M+ ion. Two ESI+ mass spectra are shown below. To test whether the molecular ion is M+ or M+H+, deuterium...

As with many nitrogen-containing compounds, 15N chemical shift information can be critical in elucidating or confirming a candidate structure. Many elucidators extract 15N chemical shifts from such experiments as 15N NMR, 1H-15N HSQC or 1H-15N HMBC. Below are two tautomers, from a previous blog, that differ in the hybridization state of the nitrogen. The 15N...